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Set default apps
After the Maps disaster, Apple apologized and recommended rival services to use in its replacement. Google Maps shot to the top of the Apple App Store within hours of its release. Along with this, there are plenty of alternative apps for Apple's own in-built features, not limited to maps, browsers, and email clients.
Apple can't control the monopoly on this anymor, and should instead embrace its own ever-expanding App Store by allowing users to set default applications. This makes even more sense with sideloaded apps provided by corporate customers.
Apple may have been accused (and accused others) of stealing ideas, but instead the industry should take a leaf out of each other's books and embrace common ideas. With the iPad in particular, Apple could allow users to multitask easily by embracing a feature first seen in Windows 7, allowing users to "snap" two apps side by side — like the Surface.
The iPad has a large enough screen to do this in portrait mode, and could allow a FaceTime or Skype call on one side of the screen while being able to make notes on a Pages document on the other side.
Uninstall native, unnecessary apps
Mentioned already, many businesses offer their own sideloaded apps that effectively replace the pre-installed apps on the iPhone or iPad. It would make more sense to allow IT managers — using MDM services — to remove unnecessary apps that aren't needed, particularly for enterprises that aren't yet BYOD ready.
While some apps and features might be necessary for iOS to function properly — these would obviously not be made available for removal — what good is it having a Mail or Safari app if a third party is already provided?