Between the Lines

Larry Dignan, Andrew Nusca and Rachel King

Can IBM's DNA transistor someday take genetic sequencing mainstream?

By | October 6, 2009, 3:08am PDT

IBM Research on Tuesday unveiled plans to create a “DNA transistor” that would result in personalized genetic testing for about $100 to $1,000. If successful, IBM could take genetic testing mainstream.

In other words, your future Best Buy shopping list may look like this: PC, digital camera, video game and DNA testing machine.

For now, IBM is drilling nano-sized holes in computer-like chips and slurping DNA strands through them to read the genetic code. This DNA transistor would slow the DNA long enough to decode it. The main objective: Create personalized genome analysis to better diagnose and treat health ailments.

The effort, scheduled to be unveiled at the Cleveland Clinic later today, features a team of scientists focused on nanofabrication, microelectronics, physics and biology. This group is trying to thread a DNA molecule through a three nanometer wide hole in a microchip. Each unit of DNA will be read by a sensor.

Here’s the architecture:

And a much prettier picture:

But here’s the problem: IBM needs to control the rate of DNA strand movement. So far, nobody has figured out how to control a DNA strand as it travels through that three nanometer hole, known as a nanopore. IBM said it is tinkering with the voltage in the nanopore to trap the DNA strand.

It’s unclear whether the IBM Research effort will make DNA Transistors a reality, but it’s certainly worth a shot.

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Larry Dignan is Editor in Chief of ZDNet and SmartPlanet as well as Editorial Director of ZDNet's sister site TechRepublic.

Disclosure

Larry Dignan

Larry Dignan has nothing to disclose. He doesn’t hold investments in the technology companies he covers.

Biography

Larry Dignan

Larry Dignan is Editor in Chief of ZDNet and SmartPlanet as well as Editorial Director of ZDNet's sister site TechRepublic. He was most recently Executive Editor of News and Blogs at ZDNet. Prior to that he was executive news editor at eWeek and news editor at Baseline. He also served as the East Coast news editor and finance editor at CNET News.com. Larry has covered the technology and financial services industry since 1995, publishing articles in WallStreetWeek.com, Inter@ctive Week, The New York Times, and Financial Planning magazine. He's a graduate of the Columbia School of Journalism and the University of Delaware.

For daily updates, follow Larry on Twitter.

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RE: Can IBM's DNA transistor someday take genetic sequencing mainstream?
Jkirk3279 6th Oct 2009
Oh, come on. To control the speed the DNA strand
passes through the reader, it's just a matter of using a
dielectric field.

Charge the chip negative, charge the carrier fluid on the
far side of the chip positive, and the carrier fluid will be
drawn through the chip carrying the DNA with it.

A bigger matter is protein folding. How do they get the
DNA to unroll before reading it?
0 Votes
+ -
sweet!
shadfurman 6th Oct 2009
is the genome xprize over? I lost track of it...
it doesn't seem to be in the news as much...
Oh, come on. To control the speed the DNA strand
passes through the reader, it's just a matter of using a
dielectric field.

Charge the chip negative, charge the carrier fluid on the
far side of the chip positive, and the carrier fluid will be
drawn through the chip carrying the DNA with it.

A bigger matter is protein folding. How do they get the
DNA to unroll before reading it?

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