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Click the Job Designer icon (4th from the left in Hue's toolbar), then the Create Mapreduce Design button, and up comes a screen that lets you run a jar-based MapReduce job. Give the job a name and a description, specify the jar file, add properties (parameters) and property values, then click Save.
You'll be automatically redirected to the Job Designs screen where you can click the Submit button for the job design you just built. You can also click the Create Streaming Design button to design a job whsoe mapper and reducer code is written in a language other than Java.