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If the 'target' uses one of the infected machines, all of their activity will be recorded, including Skype conversations. This is functionality that even the U.S. National Security Agency has reportedly had difficult with; intercepting the peer-to-peer infrastructure that Microsoft recently acquired.
FinFly LAN can inject downloads with spying software. If the 'target' is downloading files from the web, the 'agent' can run the software to discover the 'target' machine.
Because all the systems are connected via the same network, the 'agent' can inject FinSpy software in the download itself. This then gives the headquarters full access to the machine.