This past year I have had issue with Dotsters Linux servers. I have a number of websites on a Dotster server that have been infected. The sites had embeded code entered into them pointing to a javascript that went to a .ru site. We had to contact dotster tech support to have them fix the issue since it wasn't just our websites having the issue it was all sites on that specific server. Dotster had to run a script on the server to go through all the html pages on the server and remove the malicious code.
So while I agree windows might having more security issue linux is not completely secure either.
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