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I couldn't list my top apps for the Nexus 7 without including the Evernote app. I am heavily ingrained in the Evernote cloud service and this app is one of the most heavily used on my Nexus 7.
I'm not that big a fan of the current interface design but it gets out of the way when I am working with my notes.
I am a heavy Chrome browser user on all my devices and the Nexus 7 is no different. I find the Chrome app on the Nexus 7 to be the best mobile browser on any platform. It runs fast on the Nexus 7 and is just like a full desktop browser, because it is.
It synce all your settings and bookmarks with all other Chrome browsers so if you use Chrome on the desktop all your stuff will be at your fingertips in seconds after starting Chrome the first time on the Nexus 7.